Plant intron-splicing efficiency database
WebAres Lab Yeast Intron Database. Search for information about the spliceosomal introns of the yeast Saccharomyces cerevisiae. ... gene structure prediction in plant genomes. Predict gene structures of plant genomes. ... H-DBAS -- Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H ... WebMar 28, 2024 · Differential splicing efficiency of specific introns is a mechanism that dramatically increases protein diversity, based on selection of alternative exons for the …
Plant intron-splicing efficiency database
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WebPlant IntronRatio database, Zhailab@SUSTech. (. Rice. (10,710 libraries) Plant Intron Splicing Efficiency Database. Search gene intron ratio levels from Maize public RNA-Seq libraries. All Libraries Tutorial Cite. WebBuilding a comprehensive database for plant intron- splicing efficiency Our database is a collection of over 57,000 public next- generation sequencing (NGS) RNA-seq libraries and the given pipeline for each plant was used to analyze intron- …
WebThe process of intron splicing in higher plant genes involves interaction between multiple cis-acting elements and trans-acting factors, such as 5′ splicing site, 3′ splicing site and … WebJan 7, 2013 · Depending on the location of SREs and their effect on splicing, they are grouped into four classes: intronic splicing enhancers (ISEs), intronic splicing silencers …
WebThe exon junction complex (EJC) that is deposited onto spliced mRNAs upstream of exon–exon junctions plays important roles in multiple post-splicing gene expression events, such as mRNA export, surveillance, localization, and translation. However, a direct role for the human EJC in pre-mRNA splicing has not been fully understood. Using HeLa cells, we … WebPlant Intron Splicing Efficiency Database Search gene intron ratio levels from plants public RNA-Seq libraries Organism: All Libraries Tutorial Cite History + Go to One Intron
WebPlant Intron Splicing Efficiency Database Search gene intron ratio levels from Maize public RNA-Seq libraries All Libraries Tutorial Cite History Advanced Options +
WebJun 1, 2024 · Here, we established the first-ever large-scale splicing efficiency database to date in any organism. Our database includes more than 57,000 plant public RNA-seq libraries, including 25,283 from Arabidopsis, 17,789 from maize, 10,710 from rice, and 3,974 from soybean, and in total covers more than 1.6 million introns in these four species. decathlon telford shropshireWebThe process of intron splicing in higher plant genes involves interaction between multiple cis -acting elements and trans -acting factors, such as 5′ splicing site, 3′ splicing site and many protein factors. The process of intron splicing is an important level at which gene expression is regulated. decathlon team valley opening timesWebAug 1, 2024 · Online tools for extracting intron information and intercepting intron sequences were retrieved and obtained. PID will become a fundamental comprehensive database for plant intron research and greatly facilitate further investigation of the distribution, length characteristics and splicing properties of introns. 2. decathlon tendeWebSep 16, 2024 · RT-PCR analysis showed that the intron 2 was spliced equally in the wild-type and the complemented plants (Fig. S2), indicating that Emp32 is required for the splicing of nad7 intron 2. Then we detected whether over-expression of Emp32 increases the splicing efficiency of nad7 intron 2 in over-expression plants. decathlon tempe hoursWebJun 1, 2024 · Plant Intron Splicing Efficiency Database (PISE): exploring splicing of ∼1,650,000 introns in Arabidopsis, maize, rice and soybean from ∼57,000 public RNA-seq libraries bioRxiv Skip to main content Home Submit FAQ Blog ALERTS / RSS About Channels Advanced Search bioRxiv posts many COVID19-related papers. decathlon telford ukhttp://plantintron.com/tutorial.php decathlon tennis netsWebPlant IntronRatio database, Zhailab@SUSTech ( Rice (10,710 libraries) Plant Intron Splicing Efficiency Database Search gene intron ratio levels from Rice public RNA-Seq libraries All … decathlon tendas